PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_77219_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 94aa    MW: 11113.3 Da    PI: 11.1669
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_77219_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-182366146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  cra_locus_77219_iso_2_len_280_ver_3 23 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 66
                                         8999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-21375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-8329IPR009057Homeodomain-like
PROSITE profilePS5129424.8311872IPR017930Myb domain
SMARTSM007173.4E-152270IPR001005SANT/Myb domain
PfamPF002497.8E-172366IPR001005SANT/Myb domain
CDDcd001675.64E-122766No hitNo description
Gene3DG3DSA:1.10.10.602.7E-213068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
GLKRTGKSCR LRRLNYLRPD VRRGNITPEE QLLIMELHAK WGNRWSKIAK HLPGRTDNEI  60
KNFWRTRIQK HMKQGDDSNF NGQNDNHSND QASX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-1747240108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468270.17e-54PREDICTED: myb-related protein 305-like
SwissprotQ9LK953e-51MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A0K0MAN29e-53A0A0K0MAN2_FRAAN; Emission of benzenoids II protein
STRINGfgenesh1_pm.C_scaffold_50004456e-49(Arabidopsis lyrata)
STRINGAT3G27810.16e-49(Arabidopsis thaliana)